PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_120730_wjao.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 509aa    MW: 56139.7 Da    PI: 6.5135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_120730_wjao.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-13364410455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Bv5_120730_wjao.t1 364 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 410
                         799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4349238IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.085360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-14363414No hitNo description
SuperFamilySSF474592.49E-19363430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-19364427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10364410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-15366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MGVNCEFKEE DKAMLESVVG VEACKLLISR GCEGFLSDFK PTNSMLNRQQ GLCQIVDSSN  60
WNYAILWQIV SSKKDGRSVL IWGDGHCRHP NAVVAGERGD GGEDELVEGN GEISKKDEAK  120
KRVLEKLHAC FGGSEGGNFA ATLDKVSDIE MLYLTSMYYW FWLDSAMGPA KCFTSGRPIW  180
VSDGEACLDY YQSRAQLARS ANFRTVVFVP VQTGVLELGS IRMVLEEPNL VQMVKHIFGE  240
PRSLQAKAFP KIFGCELSLS GSKPQSTNLN FTPKLEDDAA FSAESHVGGS NVGGKHTFGS  300
SSNGCCSDDS GKKLVSEINF GGLNPETQNP GLEQAKEELI LQASQPKPRK RGRKPANGRE  360
EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAISYITDLQ MKVKMLEAEK  420
EMANPNHKHM AIPEIDFQAR QDDALLHVSF PLDLHPASTV VRTLRDNQVM APEANVSTTD  480
NKIIHTFTIR TQSGGAENLK EKLQAALSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-154923810192Transcription factor MYC3
4rqw_B1e-154923810192Transcription factor MYC3
4rs9_A1e-154923810192Transcription factor MYC3
4yz6_A1e-154923810192Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679205.10.0PREDICTED: transcription factor bHLH3-like
TrEMBLA0A0J8C9S00.0A0A0J8C9S0_BETVU; Uncharacterized protein
STRINGPOPTR_0002s04310.11e-177(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-154bHLH family protein